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When the Great Schism occurred, the Covenant Empire was split into two factions: Loyalists and Separatists. The loyalists were led by the Prophet of Truth with the Brutes replacing the Elites as the new military leaders and protectors of the Prophets. Other races soon joined the faction too: Grunts, Jackals, Drones and Hunters. The Prophet of Mercy also acted as a leader within the faction but died before the loyalists left the Flood-consumed High Charity.
The loyalists went to Earth with the intentions of destroying Humanity but their forces and Anti-Air weapons were eliminated, so Truth and his fleet went through a portal to the Ark where the loyalists planned on firing the Halo Array. Brutes captured Sergeant Major Avery Junior Johnson and planned on using the soldier to make him activate Halo. But John 117 and Thel 'Vadam arrived at the Citadel and fought through the waves of Covenant loyalists, then finally confronted Truth. John stopped the rings, and Truth was killed by Thel.
- Prophet of Truth: Leader of the Covenant Loyalists (Deceased)
- Prophet of Mercy: Leader of the Covenant Loyalists (Deceased)
- Tartarus: Leader of the Brutes (Deceased)
- B-021-331: Brute Stalker (Deceased)
- B-054-846: Brute War Chieftain (Deceased)
- B-010-233: Brute Chieftain (Deceased)
- B-113-421: Brute Minor (Deceased)
- Lepidus: Brute Shipmaster (Deceased)
- G-020-055: Special Operations Grunt (Unknown status)
|Chieftain of the Brutes||Leader of the Brutes||Fist of Rukt|
|Shipmaster||Commanders of Covenant Ships||Unknown|
|War Chieftain||Pack Commanders||Gravity Hammer, Fuel Rod Gun, Brute Spiker and Plasma Turret|
|Chieftain||Pack Commanders, Clan Leaders||Gravity Hammer, Brute Spiker, Plasma Turret and Fuel Rod Gun|
|Captain Ultra||Commanders of lesser troops||Brute Shot, Plasma Rifle, Brute Spiker, Covenant Carbine, Shade Turret and Fuel Rod Gun|
|Captain Major||Commanders of Brute Packs, Commanders of lesser races||Gravity Hammer, Plasma Rifle, Brute Spiker, Covenant Carbine, Fuel Rod Gun and Shade Turret|
|Captain||Commanders of lesser troops||Brute Shot, Brute Plasma Rifle, Brute Spiker, Mauler, Covenant Carbine, Shade Turret and Fuel Rod Gun|
|Honor Guard||Guards||Covenant Carbine, Brute Plasma Rifle, Brute Shot and Energy Stave|
|Bodyguard||Protectors of Chieftains, Protectors of the Prophets, Enforcers of tribal law||
Plasma Rifle, Brute Spiker, Brute Shot, Mauler and Covenant Carbine
|Jump Pack Captain||Highest Jump Pack Brute||
Like other JP Brutes
Jump Pack Major
|More experienced Jump Pack Brutes||Like other JP Brutes|
|Jump Pack Minor||Brute counterparts to Elite Rangers||Brute Plasma Rifle, Plasma Rifle, Brute Spiker, Brute Shot, Covenant Carbine and Fuel Rod Gun|
|Stalker||Secret police of the Covenant, Brute counterparts to Stealth Elites||Plasma Rifle, Brute Spiker, Brute Shot and Mauler|
|Ultra||Leaders of lesser Covenant troops||Plasma Rifle, Brute Spiker, Covenant Carbine, Brute Shot, Particular Beam Rifle, Mauler and Fuel Rod Gun|
|Major||Infantry, Lance leaders||Plasma Rifle, Covenant Carbine, Brute Shot, Fuel Rod Gun, Brute Spiker, Particular Beam Rifle, Mauler and Gravity Hammer|
|Minor||Infantry, Lance leaders||Brute Spiker, Plasma Rifle, Covenant Carbine, Brute Shot, Fuel Rod Gun, Particular Beam Rifle, Brute Plasma Rifle and Mauler|
|Sniper||Reconnaissance, Cover Fire||Covenant Carbine and Beam Rifle|
|Major||Infantry, Support||Needler and Plasma Pistol|
|Minor||Infantry, Support||Needler and Plasma Pistol|
|Special Operations||Infantry, Scout||Plasma Pistol and Needler|
|Heavy||Heavy Weapons experts, Defenders, Combat Support||Plasma Pistol, Needler, Plasma Turret and Fuel Rod Gun|
|Major||Infantryman||Plasma Pistol and Needler|
|Minor||Infantryman||Plasma Pistol and Needler|
Hunters are heavy infantrymen which are made up of lekgolo, which are also used to control scarabs. They wield Assault Cannons and Shields.
Drones are insectoid aliens that serve as air units. They wield Plasma Pistols and Needlers.